Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEA56954.1Iron-regulated ABC transporter ATPase subunit SufC. (239 aa)    
Predicted Functional Partners:
SEA56976.1
Hypothetical protein.
 
 
 0.999
SEA51760.1
Nitrogen fixation protein NifU.
  
  
 0.811
SEA84318.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.811
SEA81292.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.773
SEA13523.1
Xanthine dehydrogenase accessory factor.
  
  
 0.755
SEA13567.1
Cysteine desulfurase family protein.
  
  
 0.755
SEA34194.1
Selenocysteine lyase/Cysteine desulfurase.
  
  
 0.755
SEA58516.1
Cysteine desulfurase family protein.
  
  
 0.755
SEA58540.1
Xanthine dehydrogenase accessory factor.
  
  
 0.755
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
       0.714
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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