Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEA58810.1Diaminopropionate ammonia-lyase. (404 aa)    
Predicted Functional Partners:
SEA58836.1
Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains.
 
     0.920
SEA63965.1
Acetolactate synthase, small subunit.
  
 0.904
SEA25416.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.892
SEA58784.1
Putative selenium metabolism hydrolase.
 
  
 0.879
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.861
SEA71795.1
Branched chain amino acid aminotransferase apoenzyme.
  
 0.859
SEA77324.1
4-amino-4-deoxychorismate lyase.
  
 0.859
SEA50440.1
Threonine synthase.
  
 
 0.847
SEA50662.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.833
SEA58757.1
Knotted carbamoyltransferase YgeW; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.819
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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