Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEA59028.1Putative ABC transport system permease protein. (846 aa)    
Predicted Functional Partners:
SEA59049.1
Putative ABC transport system ATP-binding protein.
 
 0.998
SDZ97692.1
Putative ABC transport system ATP-binding protein.
 
 0.982
SDZ88937.1
Putative ABC transport system ATP-binding protein.
  
 0.979
SEA23770.1
Putative ABC transport system ATP-binding protein.
  
 0.979
SEA29501.1
Conjugative transposon protein TcpC.
  
 0.979
SEA46913.1
Molybdate transport system ATP-binding protein.
  
 0.979
SEA66050.1
Putative ABC transport system ATP-binding protein.
  
 0.979
SEA59071.1
Signal transduction histidine kinase.
 
   
 0.913
SDZ97720.1
HlyD family secretion protein.
 
 
 0.908
SEA59099.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
   
 0.881
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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