Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA64525.1Thioredoxin reductase. (423 aa)    
Predicted Functional Partners:
SEA64546.1
CxxC motif-containing protein.
 
    0.961
SEA64502.1
Glycerol-3-phosphate dehydrogenase.
 
  0.957
SEA78386.1
CxxC motif-containing protein.
    0.864
SEA09932.1
CxxC motif-containing protein.
 
    0.837
SEA53690.1
CxxC motif-containing protein.
 
    0.837
SEA53731.1
Glycerol-3-phosphate dehydrogenase.
 
  0.827
SEA83009.1
Glycerol-3-phosphate dehydrogenase.
 
  0.825
SEA78351.1
Glycerol-3-phosphate dehydrogenase.
 
  0.824
SEA09873.1
Glycerol-3-phosphate dehydrogenase.
 
  0.810
SEA58884.1
Putative selenate reductase.
  
 
  0.757
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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