Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA66026.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
SEA66008.1
Putative ABC transport system permease protein.
 
    0.889
SEA66050.1
Putative ABC transport system ATP-binding protein.
  
    0.720
SEA46807.1
Calcineurin-like phosphoesterase.
  
     0.602
SDZ97380.1
YgiT-type zinc finger domain-containing protein.
  
     0.549
SEA09730.1
Glycosyl-4,4'-diaponeurosporenoate acyltransferase.
  
     0.490
SEA65985.1
Yip1 domain-containing protein.
       0.473
SEA07750.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.458
SEA65598.1
Hypothetical protein.
  
  
  0.456
SEA50011.1
Hypothetical protein.
  
     0.453
SEA16483.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.442
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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