Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA68862.1Phosphoglycolate phosphatase. (244 aa)    
Predicted Functional Partners:
SEA42870.1
Phosphoglycolate phosphatase.
  
  
  0.826
SEA79099.1
IMP dehydrogenase.
 
 
  0.780
SEA64843.1
Phosphoglycolate phosphatase.
  
  
  0.767
SDZ89356.1
PTS system IIA component, Glc family.
  
 
  0.757
SEA83275.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
 
  0.757
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
   
 
  0.731
SEA72747.1
Chorismate mutase.
  
 
  0.712
SEA69674.1
Fumarate hydratase subunit beta.
 
      0.604
SDZ91658.1
PTS system, sucrose-specific IIC component.
    
  0.598
SDZ89462.1
PTS system maltose-specific IIB component, Glc family /PTS system maltose-specific IIC component, Glc family.
    
  0.598
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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