Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA70818.1Protein of unknown function. (324 aa)    
Predicted Functional Partners:
SEA70794.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
     0.935
SEA70909.1
Protein of unknown function.
     0.914
SEA70883.1
Energy-coupling factor transport system permease protein.
 
     0.913
SEA70839.1
ECF-type riboflavin transporter, S component.
 
     0.911
SEA70859.1
Energy-coupling factor transport system ATP-binding protein.
 
     0.911
SEA70928.1
Hypothetical protein.
 
     0.888
SEA12182.1
Ig-like domain (group 2).
 
     0.732
SEA07528.1
Zn-finger-like domain-containing protein.
  
    0.476
SDZ93201.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
    
 
 0.464
SDZ93255.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
    
 
 0.464
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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