Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA71843.1Type IV pilus assembly protein PilC. (359 aa)    
Predicted Functional Partners:
SEA71825.1
Type IV pilus assembly protein PilB.
 
 
 0.990
SEA72706.1
Type IV pilus assembly protein PilB.
 
 
 0.959
SEA71867.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.907
SEA35020.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.888
SEA34994.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.835
SEA40921.1
Twitching motility protein PilT.
 
  
 0.795
SEA72724.1
Twitching motility protein PilT.
 
  
 0.795
SEA34813.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.790
SEA56015.1
Competence protein ComEA.
  
  
 0.765
SEA35229.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.746
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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