Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA71656.1Cell Wall Hydrolase. (374 aa)    
Predicted Functional Partners:
SEA16321.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.744
SDZ99786.1
Uncharacterized conserved protein YlxW, UPF0749 family.
 
     0.680
SDZ99816.1
Uncharacterized conserved protein YlxW, UPF0749 family.
 
     0.680
SDZ99843.1
Small basic protein.
  
     0.659
SEA67258.1
Methyltransferase domain-containing protein.
  
  
 0.553
SEA71674.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.553
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.549
SEA71633.1
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.549
SDZ92941.1
Uncharacterized conserved protein YybS, DUF2232 family.
  
     0.542
SEA28806.1
AAA domain (dynein-related subfamily).
  
     0.510
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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