Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA73063.1Penicillin-binding protein. (690 aa)    
Predicted Functional Partners:
SDZ99704.1
Cell division protein FtsW; Belongs to the SEDS family.
 0.959
SEA30674.1
Penicillin-binding protein 1A.
 
 
 0.914
SEA24982.1
Penicillin-binding protein 1A.
  
 
 0.856
SDZ99764.1
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.851
SDZ99582.1
Hypothetical protein.
  
 
 0.843
SEA72238.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.806
SEA68409.1
Septum formation initiator.
  
 
 0.796
SEA73077.1
Hypothetical protein.
       0.773
SDZ99602.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
    
 0.755
SEA09019.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.743
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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