Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA72688.1DNA-binding transcriptional regulator, GntR family. (219 aa)    
Predicted Functional Partners:
SEA18311.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
 
  
 0.750
SEA63965.1
Acetolactate synthase, small subunit.
   
    0.563
SEA72706.1
Type IV pilus assembly protein PilB.
       0.520
SEA72724.1
Twitching motility protein PilT.
       0.464
SEA18747.1
Phenylpropionate dioxygenase, large terminal subunit.
     
 0.461
SEA38427.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.451
SEA72643.1
Putative nucleotide-binding of sugar-metabolising enzyme.
 
     0.415
SEA78251.1
Putative nucleotide-binding of sugar-metabolising enzyme.
 
     0.415
SEA63484.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.407
SEA38167.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.406
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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