Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA77763.1Rubredoxin. (53 aa)    
Predicted Functional Partners:
SEA79973.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.879
SEA47942.1
NADH-quinone oxidoreductase subunit F.
  
 
 0.818
SEA26371.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
    
 0.810
SEA39830.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 
 0.784
SEA47565.1
NADPH-dependent glutamate synthase beta chain.
     
 0.754
SDZ90366.1
Acyl-CoA reductase (LuxC).
    
 0.749
SEA19048.1
Propionaldehyde dehydrogenase.
    
 0.749
SEA35824.1
Propionaldehyde dehydrogenase.
    
 0.749
SEA61732.1
Acetaldehyde dehydrogenase (acetylating).
    
 0.749
SEA81863.1
Propionaldehyde dehydrogenase.
    
 0.749
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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