Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA82606.1Hypothetical protein. (804 aa)    
Predicted Functional Partners:
SEA28746.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
     
 0.788
SEA82591.1
Hypothetical protein.
     
 0.763
SDZ90128.1
PTS system, fructose-specific IIC component.
     
 0.753
SDZ99156.1
acetyl-CoA decarbonylase/synthase beta subunit.
    
  0.742
SEA50662.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
    
  0.735
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
  0.730
SEA66846.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
     
 0.725
SEA79099.1
IMP dehydrogenase.
     
  0.724
SEA82623.1
Hypothetical protein.
       0.704
SEA82639.1
Double zinc ribbon.
       0.673
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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