Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA82639.1Double zinc ribbon. (442 aa)    
Predicted Functional Partners:
SEA82538.1
Regulatory protein, luxR family.
 
     0.842
SEA82653.1
Zinc-ribbon domain-containing protein.
       0.759
SEA82623.1
Hypothetical protein.
       0.746
SEA79680.1
Transposase DDE domain-containing protein.
  
     0.709
SEA82606.1
Hypothetical protein.
       0.673
SEA82591.1
Hypothetical protein.
       0.650
SEA06128.1
Hypothetical protein.
  
     0.590
SEA82574.1
Hypothetical protein.
       0.523
SEA82557.1
Hypothetical protein.
       0.486
SEA84722.1
Hypothetical protein.
  
     0.453
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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