Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA85480.1Glycine betaine/proline transport system ATP-binding protein. (399 aa)    
Predicted Functional Partners:
SEA85444.1
Glycine betaine/proline transport system substrate-binding protein.
 
 0.999
SEA85458.1
Glycine betaine/proline transport system permease protein.
 
 0.999
SEA57195.1
ABC-type proline/glycine betaine transport system, permease component.
 
 
 0.805
SEA57176.1
Glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
 
 0.609
SEA85497.1
Hypothetical protein.
       0.489
SEA86010.1
TrkA-C domain-containing protein.
     
 0.463
SEA85515.1
MatE protein.
       0.418
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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