Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA86181.1GHKL domain-containing protein. (163 aa)    
Predicted Functional Partners:
SEA19219.1
Ligand-binding sensor domain-containing protein.
    
  0.718
SEA33419.1
Hypothetical protein.
  
  
  0.699
SEA30068.1
Helix-turn-helix domain-containing protein.
    
  0.589
SEA76788.1
AraC-type DNA-binding protein.
    
  0.589
SEA86268.1
Sensor histidine kinase YesM.
  
  
 0.584
SEA83492.1
GHKL domain-containing protein.
  
     0.569
SEA38872.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
   
 0.452
SEA02092.1
DNA transformation protein.
  
     0.433
SEA83529.1
LytTr DNA-binding domain-containing protein.
 
 
 0.432
SDZ91528.1
DNA-binding response regulator, LytR/AlgR family.
 
 
 0.413
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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