STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW45185.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)    
Predicted Functional Partners:
APW45184.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
APW45187.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.825
APW45186.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
APW48113.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
APW45896.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
APW45188.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
RA876_17145
GDP-mannose 4,6-dehydratase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.491
Your Current Organism:
Rhodoferax antarcticus
NCBI taxonomy Id: 81479
Other names: ATCC 700587, R. antarcticus, Rhodoferax antarcticus Madigan et al. 2001, strain ANT.BR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.