STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RA876_13620Hypothetical protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
APW47243.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.871
APW46063.1
Addiction module antidote protein, HigA family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
APW47129.1
Plasmid maintenance system killer; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.699
RA876_02225
Group II intron reverse transcriptase/maturase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
APW46062.1
Plasmid maintenance system killer; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.525
APW45381.1
Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.509
APW47218.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.507
Your Current Organism:
Rhodoferax antarcticus
NCBI taxonomy Id: 81479
Other names: ATCC 700587, R. antarcticus, Rhodoferax antarcticus Madigan et al. 2001, strain ANT.BR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.