STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhh3Pleckstrin homology, MyTH4 and FERM domain containing H3. (767 aa)    
Predicted Functional Partners:
LOC102312715
Usher syndrome 1C.
   
 0.735
LOC102306640
Usher syndrome 1Ga (autosomal recessive).
   
 0.696
LOC102289540
Usher syndrome 1Gb (autosomal recessive).
   
 0.696
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.696
LOC102305752
Whirlin b.
    
 0.695
whrn
Whirlin a.
    
 0.695
neo1
Neogenin 1b.
    
  0.641
dcc
DCC netrin 1 receptor.
    
  0.641
LOC102296328
Myosin, light chain 6, alkali, smooth muscle and non-muscle.
    
 0.625
LOC102300904
Uncharacterized protein.
    
 0.625
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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