pde6g protein (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pde6g

Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b. (87 aa)

Predicted Functional Partners:

LOC102314661

0.992

LOC102304204

0.991

pde5a

0.979

pde6a

0.968

LOC102302197

0.964

pde6c

0.951

LOC102292070

0.930

LOC102298597

0.926

LOC102312728

0.923

pde11a

0.923

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102292070	LOC102302197	ENSHBUP00000017201	ENSHBUP00000013648	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.886
LOC102292070	LOC102304204	ENSHBUP00000017201	ENSHBUP00000034430	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.964
LOC102292070	LOC102314661	ENSHBUP00000017201	ENSHBUP00000000963	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.971
LOC102292070	pde11a	ENSHBUP00000017201	ENSHBUP00000017844	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.581
LOC102292070	pde5a	ENSHBUP00000017201	ENSHBUP00000004595	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.581
LOC102292070	pde6a	ENSHBUP00000017201	ENSHBUP00000032077	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.891
LOC102292070	pde6c	ENSHBUP00000017201	ENSHBUP00000024295	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.854
LOC102292070	pde6g	ENSHBUP00000017201	ENSHBUP00000001751	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.930
LOC102298597	LOC102302197	ENSHBUP00000000059	ENSHBUP00000013648	Phosphodiesterase.	Phosphodiesterase.	0.581
LOC102298597	LOC102304204	ENSHBUP00000000059	ENSHBUP00000034430	Phosphodiesterase.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.495
LOC102298597	LOC102312728	ENSHBUP00000000059	ENSHBUP00000003866	Phosphodiesterase.	Guanylate cyclase.	0.891
LOC102298597	LOC102314661	ENSHBUP00000000059	ENSHBUP00000000963	Phosphodiesterase.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.495
LOC102298597	pde11a	ENSHBUP00000000059	ENSHBUP00000017844	Phosphodiesterase.	Phosphodiesterase.	0.577
LOC102298597	pde5a	ENSHBUP00000000059	ENSHBUP00000004595	Phosphodiesterase.	Phosphodiesterase.	0.565
LOC102298597	pde6a	ENSHBUP00000000059	ENSHBUP00000032077	Phosphodiesterase.	Phosphodiesterase.	0.581
LOC102298597	pde6c	ENSHBUP00000000059	ENSHBUP00000024295	Phosphodiesterase.	Phosphodiesterase.	0.833
LOC102298597	pde6g	ENSHBUP00000000059	ENSHBUP00000001751	Phosphodiesterase.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.926
LOC102302197	LOC102292070	ENSHBUP00000013648	ENSHBUP00000017201	Phosphodiesterase.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.886
LOC102302197	LOC102298597	ENSHBUP00000013648	ENSHBUP00000000059	Phosphodiesterase.	Phosphodiesterase.	0.581
LOC102302197	LOC102304204	ENSHBUP00000013648	ENSHBUP00000034430	Phosphodiesterase.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.949