STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psme3ip1Family with sequence similarity 192 member A. (254 aa)    
Predicted Functional Partners:
gsc
Goosecoid.
    
   0.946
psme3
Proteasome activator subunit 3.
    
 
 0.903
cactin
Cactin.
    
 
 0.886
prpf8
Pre-mRNA processing factor 8.
    
   0.885
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.885
xab2
XPA binding protein 2.
    
   0.885
fam32a
Family with sequence similarity 32 member A.
    
 
 0.792
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
   0.789
prkrip1
PRKR interacting protein 1.
    
 
 0.789
bcas2
BCAS2 pre-mRNA processing factor.
   
   0.786
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.