STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102296905Solute carrier family 25 member 40; Belongs to the mitochondrial carrier (TC 2.A.29) family. (319 aa)    
Predicted Functional Partners:
txnl1
Thioredoxin-like 1.
   
    0.685
ENSHBUP00000013638
ABC transporter domain-containing protein.
     
 0.675
rundc3b
RUN domain containing 3b.
      
 0.605
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
     
 0.559
LOC102292457
ATP-binding cassette, sub-family B (MDR/TAP), member 11b.
     
 0.546
abcb11
ATP-binding cassette, sub-family B (MDR/TAP), member 11a.
     
 0.546
tmlhe
Trimethyllysine hydroxylase, epsilon.
     
 0.524
crot
Carnitine O-octanoyltransferase.
      
 0.480
dmtf1
Cyclin D binding myb-like transcription factor 1.
      
 0.455
htt
Huntingtin.
     
 0.449
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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