STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102310968Ubiquitin-like domain-containing protein. (92 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.997
LOC102296415
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.971
trip12
Thyroid hormone receptor interactor 12.
   
 0.961
traf7
TNF receptor-associated factor 7.
    
 0.944
LOC102304227
NBR1 autophagy cargo receptor b.
   
 0.940
nbr1
NBR1 autophagy cargo receptor a.
   
 0.940
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.916
LOC102307660
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.915
LOC102292115
Uncharacterized protein.
    
 0.915
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.915
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.