STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6Programmed cell death 6. (185 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.883
cast
Calpastatin.
   
 0.827
sec31b
SEC31 homolog B, COPII coat complex component.
    
 
 0.800
sec31a
SEC31 homolog A, COPII coat complex component.
    
 
 0.800
LOC102300854
Heme binding protein 2.
    
   0.766
LOC102297650
Heme-binding protein soul5.
    
   0.766
LOC102292725
Heme-binding protein soul5, like.
    
   0.629
LOC102310552
Uncharacterized protein.
    
   0.629
LOC102310552-2
Uncharacterized protein.
    
   0.629
noa1
Nitric oxide associated 1.
     
 0.618
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.