STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102310137Tripartite motif containing 47. (478 aa)    
Predicted Functional Partners:
LOC102314666
Ubiquitin-like domain-containing protein.
    
  0.601
rps27a
Ribosomal protein S27a.
    
  0.596
LOC102308555
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.475
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.465
ubb
Ubiquitin-like domain-containing protein.
    
  0.461
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.461
gas7
Growth arrest specific 7.
    
  0.435
LOC102288966
Growth arrest-specific 7a.
    
  0.435
zfand4
Zinc finger, AN1-type domain 4.
    
  0.434
ro60
Ro60, Y RNA binding protein.
   
  0.431
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.