STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000000023Small nuclear ribonucleoprotein polypeptide A. (247 aa)    
Predicted Functional Partners:
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
    
 0.999
sf3a3
Splicing factor 3a, subunit 3.
   
 0.999
phf5a
PHD finger protein 5A.
   
 0.999
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.998
snrpg
Small nuclear ribonucleoprotein G.
   
 0.998
ENSACLP00000025572
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.998
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.998
ENSACLP00000033349
Splicing factor 3b, subunit 3.
    
 0.998
sf3b1
Splicing factor 3b, subunit 1.
   
 0.998
ENSACLP00000036553
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.998
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: medium (48%) [HD]