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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asb7Ankyrin repeat and SOCS box containing 7. (328 aa)    
Predicted Functional Partners:
LOC113036014
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.870
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.870
LOC113026544
Ankyrin repeat and SOCS box containing 13b.
  
 
0.801
rnf7
Ring finger protein 7.
    
 0.792
asb6
Ankyrin repeat and SOCS box containing 6.
    
 0.779
LOC113008662
ANK_REP_REGION domain-containing protein.
  
 
0.754
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.743
commd8
COMM domain containing 8.
   
  0.722
LOC113018914
NEDD8 ubiquitin like modifier.
    
  0.707
ENSACLP00000029713
Ubiquitin-like domain-containing protein.
    
  0.707
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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