STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc13Tetratricopeptide repeat domain 13. (826 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.926
ak9
Adenylate kinase 9.
   
 0.841
bbs9
Bardet-Biedl syndrome 9.
    
 0.804
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
  0.783
ttc8
Tetratricopeptide repeat domain 8.
    
 0.779
ENSACLP00000008297
DUF4062 domain-containing protein.
    
 0.765
ENSACLP00000019213
Bardet-Biedl syndrome 7.
    
 0.757
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 0.747
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.746
ENSACLP00000037904
Anaphase promoting complex subunit 1.
    
 0.742
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.