Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013852HD domain-containing protein. (746 aa)    
Predicted Functional Partners:
ENSACLP00000018477
LisH domain-containing protein.
    
 
 0.820
DCAF1
DDB1 and CUL4 associated factor 1.
    
 
 0.820
tk2
Thymidine kinase 2.
   
 
 0.805
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.683
ccna1
Cyclin A1; Belongs to the cyclin family.
    
 
 0.630
LOC113031225
Cyclin A2; Belongs to the cyclin family.
    
 
 0.630
ENSACLP00000041021
Cyclin F; Belongs to the cyclin family.
    
   0.544
LOC113030460
Zgc:110540.
   
 
 0.523
dck
Deoxycytidine kinase.
   
 
 0.523
ENSACLP00000003916
Uncharacterized protein.
   
 
 0.503
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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