Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lamb3Uncharacterized protein. (1158 aa)    
Predicted Functional Partners:
ENSACLP00000033830
Integrin beta.
   
 0.983
LAMC2
Laminin subunit gamma 2.
   
 0.972
ENSACLP00000033091
Laminin, gamma 1.
   
 0.968
LOC113025517
Laminin, gamma 3.
   
 0.968
LOC113028545
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.942
LOC113020103
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.942
ENSACLP00000031964
Integrin beta; Belongs to the integrin beta chain family.
   
 0.934
ENSACLP00000012857
Laminin, alpha 5.
   
 0.932
ENSACLP00000021254
Laminin EGF-like domain-containing protein.
   
 0.932
lama4
Laminin, alpha 4.
   
 0.932
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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