Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mnx1Motor neuron and pancreas homeobox 1. (314 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
 
 0.736
ptf1a
Pancreas associated transcription factor 1a.
    
 
 0.725
rfx4
Regulatory factor X, 4.
      
 0.663
olig2
Oligodendrocyte lineage transcription factor 2.
    
 
 0.658
gdf15
TGF_BETA_2 domain-containing protein.
      
 0.646
neurod1
Neurogenic differentiation factor.
    
 
 0.603
LOC113035572
Neurogenin 3.
    
 
 0.600
ISL2
ISL LIM homeobox 2b.
    
 0.596
LOC113033175
ISL LIM homeobox 1.
    
 0.596
LOC113027466
ISL LIM homeobox 2a.
    
 0.596
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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