Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clec11aC-type lectin domain containing 11A. (298 aa)    
Predicted Functional Partners:
nudcd1
NudC domain containing 1.
    
   0.880
txndc11
Thioredoxin domain containing 11.
     
 0.680
cep85
Centrosomal protein 85.
    
  0.672
ENSACLP00000036974
X-linked inhibitor of apoptosis.
    
   0.579
ENSACLP00000011725
Galactosylceramidase b.
    
   0.567
LOC113013742
Uncharacterized protein.
      
 0.529
PKP4
Plakophilin 4.
    
   0.524
LOC113028906
Catenin (cadherin-associated protein), delta 2a.
    
   0.524
LOC113010178
Catenin (cadherin-associated protein), delta 2b.
    
   0.524
LOC113034868
Synaptopodin 2-like a.
    
 
 0.523
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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