STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001013Matrix metallopeptidase 1. (390 aa)    
Predicted Functional Partners:
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.839
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.821
LOC113020696
TIMP metallopeptidase inhibitor 2b.
   
 0.811
mmp9
Matrix metallopeptidase 9.
   
0.669
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.643
LOC113018838
Matrix metallopeptidase 14a (membrane-inserted).
  
 
0.641
mmp14
Matrix metallopeptidase 14b (membrane-inserted).
  
0.626
mmp15
Matrix metallopeptidase 15b.
  
0.621
LOC113034822
Heparin-binding EGF-like growth factor a.
    
  0.600
edn1
Endothelin 1.
     
 0.590
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.