STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001014Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (275 aa)    
Predicted Functional Partners:
ENSACLP00000021335
Protection of telomeres 1 homolog.
    
 0.656
ENSACLP00000001223
Uncharacterized protein.
    
 0.595
nbn
Nibrin.
    
  0.510
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.487
tmem254
Uncharacterized protein.
     
 0.484
blvrb
Biliverdin reductase B.
     
 0.484
LOC113034419
Uncharacterized protein.
     
 0.484
GOLGA7
Golgin A7.
    
 0.480
LOC113035259
Golgin A7 family member B.
    
 0.480
ENSACLP00000015854
Golgin A7.
    
 0.480
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.