STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfngRFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase. (404 aa)    
Predicted Functional Partners:
LOC113020561
Notch receptor 3.
    
 0.888
LOC113016878
Notch receptor 2.
    
 0.888
ENSACLP00000031548
Notch receptor 1b.
    
 0.858
LOC113025559
Notch receptor 1a.
    
 0.858
LOC113024651
MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
  
  
 
0.852
LOC113020456
Beta-1,3-N-acetylglucosaminyltransferase.
  
  
 
0.851
nelfb
Negative elongation factor complex member B.
   
 0.845
polr2h
Info polymerase (RNA) II (DNA directed) polypeptide H.
    
  0.791
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
    
 0.768
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.755
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.