ebna1bp2 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ebna1bp2

EBNA1 binding protein 2. (314 aa)

Predicted Functional Partners:

brix1

0.999

pum3

0.998

ENSACLP00000010830

0.998

wdr12

0.998

ENSACLP00000009295

0.997

FTSJ3

0.997

NOP2

0.997

LOC113007828

0.996

rpf1

0.996

rrp15

0.996

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000009295	ENSACLP00000010830	ENSACLP00000009295	ENSACLP00000010830	Protein MAK16 homolog; Belongs to the MAK16 family.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.980
ENSACLP00000009295	FTSJ3	ENSACLP00000009295	ENSACLP00000028262	Protein MAK16 homolog; Belongs to the MAK16 family.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.997
ENSACLP00000009295	LOC113007828	ENSACLP00000009295	ENSACLP00000000299	Protein MAK16 homolog; Belongs to the MAK16 family.	Nucleolar protein interacting with the FHA domain of MKI67.	0.994
ENSACLP00000009295	NOP2	ENSACLP00000009295	ENSACLP00000034983	Protein MAK16 homolog; Belongs to the MAK16 family.	NOP2 nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.970
ENSACLP00000009295	brix1	ENSACLP00000009295	ENSACLP00000007673	Protein MAK16 homolog; Belongs to the MAK16 family.	Brix domain containing 2.	0.996
ENSACLP00000009295	ebna1bp2	ENSACLP00000009295	ENSACLP00000001040	Protein MAK16 homolog; Belongs to the MAK16 family.	EBNA1 binding protein 2.	0.997
ENSACLP00000009295	pum3	ENSACLP00000009295	ENSACLP00000001426	Protein MAK16 homolog; Belongs to the MAK16 family.	Pumilio RNA-binding family member 3.	0.988
ENSACLP00000009295	rpf1	ENSACLP00000009295	ENSACLP00000002509	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosome production factor 1 homolog.	0.997
ENSACLP00000009295	rrp15	ENSACLP00000009295	ENSACLP00000008653	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosomal RNA processing 15 homolog.	0.996
ENSACLP00000009295	wdr12	ENSACLP00000009295	ENSACLP00000036936	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.994
ENSACLP00000010830	ENSACLP00000009295	ENSACLP00000010830	ENSACLP00000009295	Guanine nucleotide binding protein-like 3 (nucleolar).	Protein MAK16 homolog; Belongs to the MAK16 family.	0.980
ENSACLP00000010830	FTSJ3	ENSACLP00000010830	ENSACLP00000028262	Guanine nucleotide binding protein-like 3 (nucleolar).	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.981
ENSACLP00000010830	LOC113007828	ENSACLP00000010830	ENSACLP00000000299	Guanine nucleotide binding protein-like 3 (nucleolar).	Nucleolar protein interacting with the FHA domain of MKI67.	0.988
ENSACLP00000010830	NOP2	ENSACLP00000010830	ENSACLP00000034983	Guanine nucleotide binding protein-like 3 (nucleolar).	NOP2 nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.963
ENSACLP00000010830	brix1	ENSACLP00000010830	ENSACLP00000007673	Guanine nucleotide binding protein-like 3 (nucleolar).	Brix domain containing 2.	0.977
ENSACLP00000010830	ebna1bp2	ENSACLP00000010830	ENSACLP00000001040	Guanine nucleotide binding protein-like 3 (nucleolar).	EBNA1 binding protein 2.	0.998
ENSACLP00000010830	pum3	ENSACLP00000010830	ENSACLP00000001426	Guanine nucleotide binding protein-like 3 (nucleolar).	Pumilio RNA-binding family member 3.	0.973
ENSACLP00000010830	rpf1	ENSACLP00000010830	ENSACLP00000002509	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosome production factor 1 homolog.	0.977
ENSACLP00000010830	rrp15	ENSACLP00000010830	ENSACLP00000008653	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosomal RNA processing 15 homolog.	0.973
ENSACLP00000010830	wdr12	ENSACLP00000010830	ENSACLP00000036936	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.990