Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSACLP00000001068Cleavage stimulation factor, 3' pre-RNA, subunit 2. (528 aa)    
Predicted Functional Partners:
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
    
 0.998
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
  
 0.997
sympk
Symplekin.
    
 0.995
LOC113024099
FIP1 like 1b (S. cerevisiae).
   
 0.994
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.993
WDR33
WD repeat domain 33.
    
 0.991
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.989
ENSACLP00000021431
Cleavage and polyadenylation specific factor 3.
   
 0.987
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.987
ENSACLP00000000691
CID domain-containing protein.
    
 0.985
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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