STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skiV-ski avian sarcoma viral oncogene homolog a. (715 aa)    
Predicted Functional Partners:
LOC113025730
Mothers against decapentaplegic homolog.
    
 0.947
ENSACLP00000022602
Mothers against decapentaplegic homolog.
    
 0.947
LOC113014376
Mothers against decapentaplegic homolog.
    
 0.947
LOC113033624
Mothers against decapentaplegic homolog.
    
 0.947
LOC113033248
Mothers against decapentaplegic homolog.
   
 0.940
smad3
Mothers against decapentaplegic homolog.
   
 0.940
SMAD3
Mothers against decapentaplegic homolog.
   
 0.940
LOC113025941
Mothers against decapentaplegic homolog.
   
 0.940
smad9
Mothers against decapentaplegic homolog.
   
 0.874
ENSACLP00000010348
Nuclear receptor corepressor 1.
   
 0.874
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.