Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113018639DEAH (Asp-Glu-Ala-His) box helicase 15. (751 aa)    
Predicted Functional Partners:
ENSACLP00000033349
Splicing factor 3b, subunit 3.
   
 0.991
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.989
ENSACLP00000005838
RNA binding motif protein 17.
   
 0.984
ENSACLP00000000023
Small nuclear ribonucleoprotein polypeptide A.
   
 0.982
sf3a1
Splicing factor 3a, subunit 1.
   
 0.982
sf3b1
Splicing factor 3b, subunit 1.
   
 0.982
sf3a3
Splicing factor 3a, subunit 3.
   
 0.981
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.975
ENSACLP00000036883
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.975
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
  
 0.975
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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