STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113018639DEAH (Asp-Glu-Ala-His) box helicase 15. (751 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.991
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.984
ENSACLP00000000023
Small nuclear ribonucleoprotein polypeptide A.
   
 0.981
ENSACLP00000005838
RNA binding motif protein 17.
   
 0.981
ENSACLP00000036883
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.978
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.977
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
   
 0.971
ENSACLP00000036553
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.971
ENSACLP00000026945
Programmed cell death 11.
  
 0.969
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.969
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.