gne protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gne

Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase. (763 aa)

Predicted Functional Partners:

h6pd

0.958

uap1

0.937

LOC113025209

0.937

ENSACLP00000000392

0.912

LOC113023911

0.912

ENSACLP00000000466

0.912

LOC113023912

0.912

LOC113023913

0.912

hoga1

0.904

npl

0.904

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000000392	gne	ENSACLP00000000392	ENSACLP00000001114	AFP-like domain-containing protein.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.912
ENSACLP00000000392	hoga1	ENSACLP00000000392	ENSACLP00000017452	AFP-like domain-containing protein.	4-hydroxy-2-oxoglutarate aldolase 1; Belongs to the DapA family.	0.806
ENSACLP00000000392	npl	ENSACLP00000000392	ENSACLP00000033040	AFP-like domain-containing protein.	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase); Belongs to the DapA family.	0.806
ENSACLP00000000466	gne	ENSACLP00000000466	ENSACLP00000001114	Ice-structuring protein; Lowers the blood freezing point. Contributes to protect fish blood from freezing at subzero sea water temperatures. Binds to nascent ice crystals and prevents further growth. Belongs to the type-III AFP family.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.912
ENSACLP00000000466	hoga1	ENSACLP00000000466	ENSACLP00000017452	Ice-structuring protein; Lowers the blood freezing point. Contributes to protect fish blood from freezing at subzero sea water temperatures. Binds to nascent ice crystals and prevents further growth. Belongs to the type-III AFP family.	4-hydroxy-2-oxoglutarate aldolase 1; Belongs to the DapA family.	0.806
ENSACLP00000000466	npl	ENSACLP00000000466	ENSACLP00000033040	Ice-structuring protein; Lowers the blood freezing point. Contributes to protect fish blood from freezing at subzero sea water temperatures. Binds to nascent ice crystals and prevents further growth. Belongs to the type-III AFP family.	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase); Belongs to the DapA family.	0.806
LOC113023911	gne	ENSACLP00000000438	ENSACLP00000001114	N-acetylneuraminic acid synthase b.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.912
LOC113023911	hoga1	ENSACLP00000000438	ENSACLP00000017452	N-acetylneuraminic acid synthase b.	4-hydroxy-2-oxoglutarate aldolase 1; Belongs to the DapA family.	0.806
LOC113023911	npl	ENSACLP00000000438	ENSACLP00000033040	N-acetylneuraminic acid synthase b.	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase); Belongs to the DapA family.	0.806
LOC113023912	gne	ENSACLP00000000476	ENSACLP00000001114	N-acetylneuraminic acid synthase b.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.912
LOC113023912	hoga1	ENSACLP00000000476	ENSACLP00000017452	N-acetylneuraminic acid synthase b.	4-hydroxy-2-oxoglutarate aldolase 1; Belongs to the DapA family.	0.806
LOC113023912	npl	ENSACLP00000000476	ENSACLP00000033040	N-acetylneuraminic acid synthase b.	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase); Belongs to the DapA family.	0.806
LOC113023913	gne	ENSACLP00000000517	ENSACLP00000001114	N-acetylneuraminic acid synthase b.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.912
LOC113023913	hoga1	ENSACLP00000000517	ENSACLP00000017452	N-acetylneuraminic acid synthase b.	4-hydroxy-2-oxoglutarate aldolase 1; Belongs to the DapA family.	0.806
LOC113023913	npl	ENSACLP00000000517	ENSACLP00000033040	N-acetylneuraminic acid synthase b.	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase); Belongs to the DapA family.	0.806
LOC113025209	gne	ENSACLP00000016128	ENSACLP00000001114	UDP-N-acetylglucosamine pyrophosphorylase 1, like 1.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.937
LOC113025209	hoga1	ENSACLP00000016128	ENSACLP00000017452	UDP-N-acetylglucosamine pyrophosphorylase 1, like 1.	4-hydroxy-2-oxoglutarate aldolase 1; Belongs to the DapA family.	0.684
LOC113025209	npl	ENSACLP00000016128	ENSACLP00000033040	UDP-N-acetylglucosamine pyrophosphorylase 1, like 1.	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase); Belongs to the DapA family.	0.684
LOC113025209	uap1	ENSACLP00000016128	ENSACLP00000008358	UDP-N-acetylglucosamine pyrophosphorylase 1, like 1.	UDP-N-acetylglucosamine pyrophosphorylase 1.	0.872
gne	ENSACLP00000000392	ENSACLP00000001114	ENSACLP00000000392	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	AFP-like domain-containing protein.	0.912