Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim44Tripartite motif containing 44. (375 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
     
  0.870
trim62
Tripartite motif containing 62, tandem duplicate 1.
    
 
 0.777
dnmbp
Dynamin binding protein.
    
 0.741
trim9
Tripartite motif containing 9.
    
 
 0.722
ENSACLP00000026081
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 
 0.716
usp39
Ubiquitin specific peptidase 39.
      
 0.713
arhgef38
Rho guanine nucleotide exchange factor (GEF) 38.
    
 0.705
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.703
ENSACLP00000032124
Tripartite motif containing 65.
    
 
 0.698
ENSACLP00000001125
Four-jointed box kinase 1.
    
 
 0.694
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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