STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trub1TruB pseudouridine (psi) synthase family member 1. (278 aa)    
Predicted Functional Partners:
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.997
gar1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.994
ENSACLP00000007708
Fibrillarin.
   
 
 0.989
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.989
nop10
NOP10 ribonucleoprotein homolog (yeast).
   
 0.988
ENSACLP00000036883
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.986
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
 0.983
wrap53
WD repeat containing, antisense to TP53.
    
 0.970
ENSACLP00000008177
Eukaryotic translation initiation factor 5B.
  
 
 0.960
ENSACLP00000000465
RNA helicase.
  
 
 0.955
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.