STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brat1BRCA1-associated ATM activator 1. (912 aa)    
Predicted Functional Partners:
ENSACLP00000013582
Uncharacterized protein.
    
 
 0.900
ENSACLP00000027731
Integrator complex subunit 11.
    
 
 0.879
ENSACLP00000011136
Integrator complex subunit 9.
    
 
 0.831
ENSACLP00000011370
Uncharacterized protein.
    
 
 0.831
wdr73
WD repeat domain 73.
    
 
 0.803
ints4
Integrator complex subunit 4.
    
   0.780
ENSACLP00000035592
BRCA1 associated protein.
      
 0.665
tonsl
Tonsoku-like, DNA repair protein.
      
 0.657
LOC113008023
BRCA1 associated RING domain 1.
    
 
 0.630
card19
Caspase recruitment domain family, member 19.
      
 0.629
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.