STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vldlrVery low density lipoprotein receptor. (864 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.896
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.881
dab1
DAB adaptor protein 1a.
    
 0.829
ENSACLP00000029644
Low density lipoprotein receptor adaptor protein 1b.
    
 0.825
LOC113010063
DAB adaptor protein 1b.
    
 0.805
LOC113035053
Dickkopf WNT signaling pathway inhibitor 1a.
    
 0.794
mylip
Myosin regulatory light chain interacting protein a.
    
 0.754
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.729
LOC113022284
Macrophage stimulating 1 receptor a.
    
  0.729
mst1r
Macrophage stimulating 1 receptor b.
    
  0.729
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.