STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vldlrVery low density lipoprotein receptor. (864 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.981
mylip
Myosin regulatory light chain interacting protein a.
    
 0.948
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.944
dab2
DAB adaptor protein 2.
    
 0.939
ENSACLP00000029644
Low density lipoprotein receptor adaptor protein 1b.
    
 0.922
dab1
DAB adaptor protein 1a.
    
 0.906
LOC113010063
DAB adaptor protein 1b.
    
 0.895
ENSACLP00000041064
Apolipoprotein Eb.
    
 0.884
LOC113014738
Low density lipoprotein receptor adaptor protein 1a.
    
 0.849
LOC113014966
Apolipoprotein Ea.
    
 0.835
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.