Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001189Uncharacterized protein. (647 aa)    
Predicted Functional Partners:
rab3gap2
RAB3 GTPase activating protein subunit 2 (non-catalytic).
   
 0.988
slc38a6
Solute carrier family 38 member 6.
   
    0.716
LOC113028741
RAB18A, member RAS oncogene family.
    
 0.709
LOC113010899
RAB18B, member RAS oncogene family.
    
 0.709
DMXL1
Dmx like 1.
   
 
 0.688
dmxl2
Dmx-like 2.
   
 
 0.688
WDR7
WD repeat domain 7.
    
 
 0.662
ENSACLP00000015913
Nocturnin a.
   
    0.658
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.621
ENSACLP00000031727
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.621
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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