STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113009794Uncharacterized protein. (229 aa)    
Predicted Functional Partners:
ENSACLP00000012032
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.881
trappc8
Trafficking protein particle complex 8.
    
 0.874
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.871
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.864
ENSACLP00000003055
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.830
LOC113006735
Lebercilin LCA5.
    
 0.830
LOC113013623
Trafficking protein particle complex 6b.
    
 0.815
LOC113036149
Trafficking protein particle complex 6b-like.
    
 0.815
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.813
LOC113023987
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.813
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.