STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcp11Uncharacterized protein. (485 aa)    
Predicted Functional Partners:
pald1
Phosphatase domain containing paladin 1a.
      
 0.745
depdc4
Si:ch211-265o23.1.
      
 0.741
chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.682
ttc5
Tetratricopeptide repeat domain 5.
    
   0.608
LOC113022247
Peptidylprolyl isomerase.
      
 0.592
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
     
  0.551
ENSACLP00000039321
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
  0.551
ENSACLP00000022122
Trans-2,3-enoyl-CoA reductase-like 2a.
     
 0.491
LOC113020615
Trans-2,3-enoyl-CoA reductase a.
     
 0.491
tecr
Trans-2,3-enoyl-CoA reductase b.
     
 0.491
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.