STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001254NYD-SP28 domain-containing protein. (460 aa)    
Predicted Functional Partners:
dnali1
Dynein, axonemal, light intermediate chain 1.
    
 
 0.767
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
   
  
 0.765
ENSACLP00000031712
Cilia and flagella associated protein 99.
   
   0.744
ENSACLP00000012092
Ankyrin repeat and EF-hand domain containing 1a.
   
    0.675
drc1
Uncharacterized protein.
     
 0.669
rsph14
Uncharacterized protein.
   
 
 0.660
ENSACLP00000016170
Armadillo repeat containing 4.
   
 
 0.655
LOC113023467
GAS domain-containing protein.
    
 
 0.645
LOC113023411
GAS domain-containing protein.
    
 
 0.645
ccdc39
Uncharacterized protein.
   
 
 0.638
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.