Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113006683WD repeat domain 20b. (631 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
    
 0.962
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
    
 0.891
ENSACLP00000028395
Ubiquitin specific peptidase 12b; Belongs to the peptidase C19 family.
    
 0.891
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
    
 0.891
usp1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.803
ENSACLP00000037415
Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.
    
 0.794
gak
Cyclin G associated kinase.
  
  0.770
ENSACLP00000023518
TAO kinase 3b.
     
 0.711
taok3
TAO kinase 3a.
     
 0.711
PHLPP2
PH domain and leucine rich repeat protein phosphatase 2.
   
 
 0.664
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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