Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001327Uncharacterized protein. (101 aa)    
Predicted Functional Partners:
ENSACLP00000027728
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
      
 0.642
dna2
DNA replication helicase/nuclease 2.
      
 0.620
mrps18a
Mitochondrial ribosomal protein S18A.
      
 0.607
LOC113036739
Thyroid hormone responsive.
    
  0.586
ENSACLP00000040108
MID1 interacting protein 1.
    
  0.586
LOC113014662
Mab-21 domain-containing protein.
     
  0.582
LOC113010688
IFI30 lysosomal thiol reductase.
    
  0.553
ENSACLP00000022533
Saposin A-type domain-containing protein.
    
  0.553
ENSACLP00000033949
Si:dkey-197i20.6.
    
  0.553
sting1
Transmembrane protein 173.
    
 0.515
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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